STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2218KEGG: rle:pRL70166 hypothetical protein. (94 aa)    
Predicted Functional Partners:
Lcho_2219
KEGG: gsu:GSU0551 hypothetical protein.
 
     0.952
Lcho_2217
PFAM: protein of unknown function DUF344; KEGG: reh:H16_A1212 hypothetical protein.
       0.655
Lcho_4258
KEGG: bch:Bcen2424_3352 PilT protein domain protein.
  
     0.483
Lcho_2216
PFAM: peptidase M16 domain protein; KEGG: dac:Daci_3015 peptidase M16 domain protein; Belongs to the peptidase M16 family.
       0.432
Lcho_3171
KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system.
  
     0.405
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.