STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2245KEGG: bvi:Bcep1808_1303 hypothetical protein. (373 aa)    
Predicted Functional Partners:
Lcho_2248
PFAM: protein of unknown function DUF935; KEGG: bvi:Bcep1808_1306 protein of unknown function DUF935.
 
    0.922
Lcho_2244
KEGG: rsq:Rsph17025_2097 hypothetical protein.
 
     0.921
Lcho_2243
KEGG: mag:amb1768 Mu-like prophage major head subunit gpT.
 
  
 0.919
Lcho_2247
PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: pol:Bpro_3784 phage putative head morphogenesis protein, SPP1 gp7.
 
    0.917
Lcho_2241
PFAM: protein of unknown function DUF1320; KEGG: pol:Bpro_3744 protein of unknown function DUF1320.
 
   
 0.874
Lcho_2249
KEGG: pol:Bpro_3782 hypothetical protein.
 
     0.870
Lcho_2252
KEGG: bbr:BB3634 hypothetical protein.
 
     0.866
Lcho_2251
KEGG: stt:t1374 hypothetical protein.
 
     0.839
Lcho_2284
KEGG: eca:ECA3696 putative phage regluatory protein.
 
    0.792
Lcho_2282
KEGG: mfa:Mfla_2721 hypothetical protein.
 
     0.783
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.