STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2260PFAM: Peptidase M15A; KEGG: bte:BTH_II1066 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Lcho_2259
Hypothetical protein.
       0.773
Lcho_2257
KEGG: par:Psyc_0449 hypothetical protein.
       0.705
Lcho_2258
Hypothetical protein.
       0.705
Lcho_2256
KEGG: par:Psyc_0448 hypothetical protein.
       0.602
Lcho_2255
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: par:Psyc_0447 possible RNA-directed DNA polymerase (reverse transcriptase).
 
     0.438
Lcho_2249
KEGG: pol:Bpro_3782 hypothetical protein.
 
     0.409
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.