Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Lcho_2168 | Lcho_2265 | PFAM: HipA domain protein; KEGG: pol:Bpro_1570 hypothetical protein. | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | 0.513 |
Lcho_2263 | Lcho_2264 | Hypothetical protein. | Hypothetical protein. | 0.594 |
Lcho_2263 | Lcho_2265 | Hypothetical protein. | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | 0.473 |
Lcho_2264 | Lcho_2263 | Hypothetical protein. | Hypothetical protein. | 0.594 |
Lcho_2264 | Lcho_2265 | Hypothetical protein. | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | 0.605 |
Lcho_2265 | Lcho_2168 | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | PFAM: HipA domain protein; KEGG: pol:Bpro_1570 hypothetical protein. | 0.513 |
Lcho_2265 | Lcho_2263 | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | Hypothetical protein. | 0.473 |
Lcho_2265 | Lcho_2264 | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | Hypothetical protein. | 0.605 |
Lcho_2265 | Lcho_2934 | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: mpt:Mpe_A2945 bifunctional protein diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase. | 0.402 |
Lcho_2934 | Lcho_2265 | TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: mpt:Mpe_A2945 bifunctional protein diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase. | Hypothetical protein; KEGG: aav:Aave_2905 putative transcriptional regulator, XRE family. | 0.402 |