STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2290PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: mpt:Mpe_A1370 putative HNS-like transcription regulator protein. (112 aa)    
Predicted Functional Partners:
Lcho_2808
KEGG: mpt:Mpe_A1280 hypothetical protein.
  
     0.603
Lcho_3914
KEGG: mpt:Mpe_A0205 hypothetical protein.
  
     0.595
Lcho_2289
PFAM: extracellular solute-binding protein family 1; KEGG: mpt:Mpe_A1371 putative iron binding protein component of ABC iron transporter.
     
 0.552
Lcho_2291
PFAM: NLP/P60 protein; KEGG: mpt:Mpe_A2519 cell wall-associated hydrolase-like protein.
 
     0.487
Lcho_2853
KEGG: mpt:Mpe_A3449 hypothetical protein.
  
     0.482
Lcho_2311
KEGG: mpt:Mpe_A3059 spermidine synthase-like protein.
  
     0.467
Lcho_2926
PFAM: Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2937 hypothetical protein.
  
     0.453
Lcho_2895
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.452
Lcho_1306
KEGG: mpt:Mpe_A3543 hypothetical protein.
  
     0.423
Lcho_1059
KEGG: mpt:Mpe_A1145 hypothetical protein.
  
     0.422
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.