STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2314PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap. (293 aa)    
Predicted Functional Partners:
Lcho_2315
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: pol:Bpro_3891 ATPase associated with various cellular activities, AAA_3.
       0.707
Lcho_2316
PFAM: protein of unknown function DUF58; KEGG: pol:Bpro_3892 protein of unknown function DUF58.
 
     0.598
Lcho_2317
PFAM: von Willebrand factor type A; KEGG: pol:Bpro_3893 von Willebrand factor, type A.
 
    0.597
Lcho_0604
PFAM: Anti sigma-E protein RseA family protein; KEGG: mpt:Mpe_A0643 putative transmembrane sigma-E factor negative regulatory transcription regulator protein.
  
 
 0.573
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.537
Lcho_0640
KEGG: sde:Sde_2125 4-alpha-L-fucosyltransferase.
   
 0.477
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.477
Lcho_2313
PFAM: TatD-related deoxyribonuclease; KEGG: vei:Veis_4583 TatD-related deoxyribonuclease.
     
 0.464
Lcho_1449
PAS/PAC sensor hybrid histidine kinase; KEGG: dar:Daro_2934 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
  
 0.458
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
 
   0.454
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.