STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2341TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: cpe:CPE0496 N-acetyl-mannosamine transferase; Belongs to the glycosyltransferase 26 family. (257 aa)    
Predicted Functional Partners:
Lcho_0300
PFAM: sugar transferase; KEGG: mpt:Mpe_A0608 putative sugar transferase.
   
 0.920
Lcho_2342
PFAM: glycosyl transferase family 2; KEGG: bra:BRADO4817 putative glycosyltransferase (family 2).
     
 0.793
Lcho_2343
PFAM: glycosyl transferase group 1; KEGG: mfa:Mfla_2015 glycosyl transferase, group 1.
  
 
 0.700
Lcho_0642
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: esa:ESA_03772 hypothetical protein.
 
   
 0.669
Lcho_2319
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
   
 0.511
Lcho_2347
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: mpt:Mpe_A1061 membrane protein.
  
  
 0.504
Lcho_2715
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative.
   
 0.478
Lcho_1395
PFAM: sugar transferase; KEGG: sfu:Sfum_0975 undecaprenyl-phosphate galactose phosphotransferase.
   
 0.476
Lcho_1385
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ade:Adeh_4176 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
   
 0.467
Lcho_2344
PFAM: glycoside hydrolase family 5; KEGG: psa:PST_2494 endoglucanase precursor(endo-1,4-beta-glucanase)protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.458
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.