STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2351TIGRFAM: EpsI family protein; KEGG: hch:HCH_03424 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Lcho_2352
Exosortase 2; TIGRFAM: eight transmembrane protein EpsH; exosortase 2; PFAM: Eight transmembrane protein EpsH; KEGG: nmu:Nmul_A0246 hypothetical protein.
 
     0.953
Lcho_2368
TIGRFAM: peptidyl-prolyl cis-trans isomerase, EpsD family; KEGG: mpt:Mpe_A0738 hypothetical protein.
 
     0.798
Lcho_2366
TIGRFAM: chain length determinant protein EpsF; PFAM: lipopolysaccharide biosynthesis protein; KEGG: mpt:Mpe_A2733 chain length determinant protein.
 
     0.782
Lcho_2324
PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_1502 protein of unknown function DUF1555.
  
     0.757
Lcho_2367
TIGRFAM: polysaccharide export protein EpsE; PFAM: polysaccharide export protein; KEGG: mpt:Mpe_A2734 capsular polysaccharide export protein, putative.
 
     0.751
Lcho_1376
PFAM: lipopolysaccharide biosynthesis protein; KEGG: mms:mma_0633 exopolysaccharide biosynthesis protein.
 
     0.746
Lcho_2885
KEGG: nmu:Nmul_A2461 hypothetical protein.
  
     0.700
fcl-2
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
       0.670
gmd-2
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.601
Lcho_2365
TIGRFAM: capsular exopolysaccharide family; KEGG: mpt:Mpe_A2732 tyrosine kinase.
 
     0.554
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.