STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2361PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 protein of unknown function DUF820. (191 aa)    
Predicted Functional Partners:
Lcho_4191
PFAM: protein of unknown function DUF433; KEGG: ava:Ava_1741 protein of unknown function DUF433.
  
     0.649
Lcho_1965
KEGG: xom:XOO_0504 hypothetical protein.
  
     0.542
Lcho_2362
KEGG: pol:Bpro_4981 hypothetical protein.
       0.520
Lcho_1966
KEGG: xom:XOO_0505 hypothetical protein.
  
     0.485
Lcho_4190
KEGG: rca:Rcas_0081 hypothetical protein.
  
     0.485
Lcho_1808
SMART: TIR protein; KEGG: amr:AM1_4988 hypothetical protein.
  
     0.436
Lcho_1565
PFAM: PilT protein domain protein; KEGG: gvi:gll3555 hypothetical protein.
  
     0.410
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.