STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2371PFAM: AMP-dependent synthetase and ligase; KEGG: azc:AZC_4536 putative fatty acid CoA ligase. (532 aa)    
Predicted Functional Partners:
Lcho_2370
PFAM: Thiolase; KEGG: acr:Acry_2397 propanoyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.944
Lcho_2374
KEGG: bra:BRADO4016 hypothetical protein.
 
     0.746
Lcho_2372
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pnu:Pnuc_1539 TRAP dicarboxylate transporter, DctP subunit.
 
     0.704
Lcho_2373
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: vei:Veis_4815 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
   
 0.693
Lcho_1462
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rfr:Rfer_3858 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
    
 
 0.649
Lcho_0845
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pna:Pnap_2135 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.631
Lcho_2369
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: azc:AZC_4534 transcriptional regulator.
 
 
   0.623
Lcho_3655
TIGRFAM: benzoate-CoA ligase family; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_0216 benzoate-CoA ligase family.
 
 
0.565
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.551
Lcho_4031
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mpt:Mpe_A0417 putative 3-hydroxyacyl-CoA dehydrogenase oxidoreductase.
  
 
 0.535
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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