STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2408ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_0058 ABC transporter related. (267 aa)    
Predicted Functional Partners:
Lcho_2410
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_0060 periplasmic binding protein/LacI transcriptional regulator.
 
 0.993
Lcho_2409
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vei:Veis_0059 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.971
Lcho_3314
PFAM: PfkB domain protein; KEGG: bmu:Bmul_1892 PfkB domain protein.
 
  
 0.828
Lcho_2221
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_2602 periplasmic binding protein/LacI transcriptional regulator.
 
 
 0.790
Lcho_3315
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bur:Bcep18194_A4566 acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.754
Lcho_3317
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bam:Bamb_1300 myo-inositol catabolism IolB domain protein.
 
  
 0.739
Lcho_2222
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: pna:Pnap_2604 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.686
Lcho_2412
Inositol 2-dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: vei:Veis_0056 inositol 2-dehydrogenase.
 
  
 0.669
Lcho_3316
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A4565 xylose isomerase-like TIM barrel.
 
    0.666
Lcho_2407
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: spe:Spro_3197 transcriptional regulator, LacI family.
 
  
 0.647
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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