STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2411PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mlo:mlr7629 hypothetical protein; Belongs to the hyi family. (260 aa)    
Predicted Functional Partners:
Lcho_1135
TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: pol:Bpro_4561 glyoxylate carboligase; Belongs to the TPP enzyme family.
 
 
 0.938
Lcho_1134
KEGG: pol:Bpro_4562 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the hyi family.
  
  
 
0.927
Lcho_1123
KEGG: pol:Bpro_3102 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding.
  
 
 0.921
Lcho_1133
KEGG: pol:Bpro_4563 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding.
  
 
 0.921
Lcho_1121
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
   
 
 0.908
Lcho_1989
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pna:Pnap_1622 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
   
 
 0.908
Lcho_4179
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mpt:Mpe_A0213 putative 2-hydroxyacid dehydrogenase in PhoH-CsgG intergenic region.
    
  0.904
Lcho_2412
Inositol 2-dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: vei:Veis_0056 inositol 2-dehydrogenase.
 
    0.763
Lcho_3315
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bur:Bcep18194_A4566 acetolactate synthase; Belongs to the TPP enzyme family.
 
     0.616
Lcho_3317
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bam:Bamb_1300 myo-inositol catabolism IolB domain protein.
 
     0.563
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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