STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2417PFAM: HpcH/HpaI aldolase; KEGG: pna:Pnap_3810 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (271 aa)    
Predicted Functional Partners:
Lcho_2709
KEGG: mpt:Mpe_A2173 putative lyase; Belongs to the HpcH/HpaI aldolase family.
  
  
  0.923
Lcho_2415
KEGG: reh:H16_A2424 hypothetical protein.
 
  
 0.908
Lcho_2416
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_A2423 predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
 
  
 0.852
Lcho_0078
TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: dac:Daci_1767 malonate decarboxylase acyl carrier protein.
  
  
 0.849
Lcho_3202
L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 hypothetical protein.
   
    0.807
mdcB
triphosphoribosyl-dephospho-CoA synthase MdcB; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
  
 0.708
Lcho_2418
PFAM: fumarate lyase; KEGG: pna:Pnap_3811 fumarate lyase.
       0.648
Lcho_0819
KEGG: pde:Pden_0194 hypothetical protein.
 
  
 0.630
Lcho_2697
methylmalonyl-CoA mutase, large subunit; KEGG: rfr:Rfer_2805 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein.
 
  
 0.581
Lcho_3065
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.548
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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