STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2464PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pna:Pnap_3140 AAA ATPase, central domain protein. (616 aa)    
Predicted Functional Partners:
Lcho_2465
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: pna:Pnap_3139 phage shock protein A, PspA.
 
     0.949
Lcho_3412
KEGG: pol:Bpro_0746 outer membrane protein (porin)-like.
  
     0.744
Lcho_2463
KEGG: pna:Pnap_3141 hypothetical protein.
       0.710
Lcho_2467
PFAM: Peptidoglycan-binding domain 1 protein; extracellular solute-binding protein family 1; KEGG: pna:Pnap_3137 extracellular solute-binding protein, family 1.
 
   
 0.708
Lcho_2984
KEGG: pna:Pnap_0963 hypothetical protein.
  
     0.679
Lcho_2466
KEGG: pna:Pnap_3138 hypothetical protein.
       0.608
Lcho_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.563
Lcho_2469
KEGG: pna:Pnap_3135 putative methyl-accepting chemotaxis sensory transducer.
       0.539
Lcho_1262
ABC transporter-related protein; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related.
 
 
 0.534
Lcho_0149
PFAM: Ankyrin; KEGG: pol:Bpro_4103 ankyrin.
    
 0.529
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.