STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2467PFAM: Peptidoglycan-binding domain 1 protein; extracellular solute-binding protein family 1; KEGG: pna:Pnap_3137 extracellular solute-binding protein, family 1. (523 aa)    
Predicted Functional Partners:
Lcho_1733
Ornithine carbamoyltransferase; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1906 putrescine transport system permease protein.
 
 0.993
Lcho_1734
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A1905 putrescine ABC transporter, permease protein.
 
 
 0.979
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.975
Lcho_1736
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
  
 
0.918
Lcho_0207
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mpt:Mpe_A3373 ABC transporter permease protein.
 
  
 0.898
Lcho_0206
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2470 binding-protein-dependent transport systems inner membrane component.
 
  
 0.862
Lcho_2466
KEGG: pna:Pnap_3138 hypothetical protein.
       0.773
Lcho_2465
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: pna:Pnap_3139 phage shock protein A, PspA.
 
     0.752
Lcho_0209
ABC transporter-related protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A3375 ABC transporter ATP-binding protein.
 
  
 0.713
Lcho_2464
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: pna:Pnap_3140 AAA ATPase, central domain protein.
 
   
 0.708
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.