STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2549TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: mpt:Mpe_A1287 putative phytoene synthase. (278 aa)    
Predicted Functional Partners:
Lcho_2548
TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: mpt:Mpe_A1288 putative terpenoid synthase-related protein.
  
0.961
Lcho_2550
TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1286 putative squalene/phytoene dehydrogenase.
 
    0.952
Lcho_3372
PFAM: Polyprenyl synthetase; KEGG: mpt:Mpe_A2632 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.934
Lcho_3278
PFAM: Polyprenyl synthetase; KEGG: mpt:Mpe_A0510 dimethylallyltransferase; Belongs to the FPP/GGPP synthase family.
  
 0.910
Lcho_2846
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.827
Lcho_1066
PFAM: Methyltransferase type 11; KEGG: sit:TM1040_3839 methyltransferase type 11.
    
 0.786
Lcho_1462
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: rfr:Rfer_3858 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit.
     
 0.720
Lcho_0221
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: reh:H16_A3146 glyceraldehyde 3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.657
Lcho_0446
PFAM: multi antimicrobial extrusion protein MatE; KEGG: scl:sce1470 MATE efflux family protein.
   
 
 0.657
nuoH
NADH dehydrogenase (quinone); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.
   
 
 0.650
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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