Lcho_2566 protein (Leptothrix cholodnii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

Lcho_2566

PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin, gram-negative type. (307 aa)

Predicted Functional Partners:

Lcho_1059

0.741

Lcho_3484

0.707

Lcho_3811

0.681

Lcho_0713

0.663

Lcho_1258

0.662

Lcho_2423

0.659

Lcho_0265

0.653

Lcho_3413

0.649

Lcho_2808

0.599

Lcho_3265

0.595

Your Current Organism:

Leptothrix cholodnii

NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Lcho_0265	Lcho_1059	KEGG: mpt:Mpe_A0595 hypothetical protein.	KEGG: mpt:Mpe_A1145 hypothetical protein.	0.661
Lcho_0265	Lcho_2566	KEGG: mpt:Mpe_A0595 hypothetical protein.	PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin, gram-negative type.	0.653
Lcho_0265	Lcho_2808	KEGG: mpt:Mpe_A0595 hypothetical protein.	KEGG: mpt:Mpe_A1280 hypothetical protein.	0.633
Lcho_0265	Lcho_3811	KEGG: mpt:Mpe_A0595 hypothetical protein.	KEGG: mpt:Mpe_A0118 hypothetical protein.	0.411
Lcho_0713	Lcho_1059	KEGG: dac:Daci_5627 porin, gram-negative type.	KEGG: mpt:Mpe_A1145 hypothetical protein.	0.707
Lcho_0713	Lcho_1258	KEGG: dac:Daci_5627 porin, gram-negative type.	KEGG: rfr:Rfer_0528 porin, gram-negative type.	0.665
Lcho_0713	Lcho_2423	KEGG: dac:Daci_5627 porin, gram-negative type.	KEGG: dac:Daci_5627 porin, gram-negative type.	0.548
Lcho_0713	Lcho_2566	KEGG: dac:Daci_5627 porin, gram-negative type.	PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin, gram-negative type.	0.663
Lcho_0713	Lcho_2808	KEGG: dac:Daci_5627 porin, gram-negative type.	KEGG: mpt:Mpe_A1280 hypothetical protein.	0.537
Lcho_0713	Lcho_3413	KEGG: dac:Daci_5627 porin, gram-negative type.	KEGG: mms:mma_0290 outer membrane porin.	0.672
Lcho_0713	Lcho_3484	KEGG: dac:Daci_5627 porin, gram-negative type.	PFAM: porin Gram-negative type; KEGG: slo:Shew_3260 porin, gram-negative type.	0.540
Lcho_0713	Lcho_3811	KEGG: dac:Daci_5627 porin, gram-negative type.	KEGG: mpt:Mpe_A0118 hypothetical protein.	0.742
Lcho_1059	Lcho_0265	KEGG: mpt:Mpe_A1145 hypothetical protein.	KEGG: mpt:Mpe_A0595 hypothetical protein.	0.661
Lcho_1059	Lcho_0713	KEGG: mpt:Mpe_A1145 hypothetical protein.	KEGG: dac:Daci_5627 porin, gram-negative type.	0.707
Lcho_1059	Lcho_1258	KEGG: mpt:Mpe_A1145 hypothetical protein.	KEGG: rfr:Rfer_0528 porin, gram-negative type.	0.728
Lcho_1059	Lcho_2423	KEGG: mpt:Mpe_A1145 hypothetical protein.	KEGG: dac:Daci_5627 porin, gram-negative type.	0.675
Lcho_1059	Lcho_2566	KEGG: mpt:Mpe_A1145 hypothetical protein.	PFAM: porin Gram-negative type; KEGG: ajs:Ajs_0134 porin, gram-negative type.	0.741
Lcho_1059	Lcho_2808	KEGG: mpt:Mpe_A1145 hypothetical protein.	KEGG: mpt:Mpe_A1280 hypothetical protein.	0.759
Lcho_1059	Lcho_3265	KEGG: mpt:Mpe_A1145 hypothetical protein.	KEGG: pna:Pnap_0301 hypothetical protein.	0.701
Lcho_1059	Lcho_3413	KEGG: mpt:Mpe_A1145 hypothetical protein.	KEGG: mms:mma_0290 outer membrane porin.	0.756