STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2597PFAM: permease YjgP/YjgQ family protein; KEGG: mpt:Mpe_A1944 hypothetical protein. (368 aa)    
Predicted Functional Partners:
Lcho_2596
PFAM: permease YjgP/YjgQ family protein; KEGG: mpt:Mpe_A1943 putative transmembrane protein.
 
 0.999
Lcho_4226
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0149 putative ATP-binding ABC transporter protein.
 
 
 0.985
Lcho_0184
PFAM: protein of unknown function DUF1239; KEGG: mpt:Mpe_A3807 putative transmembrane protein.
 
 
 0.925
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.828
Lcho_2598
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mpt:Mpe_A1945 hypothetical protein.
  
    0.809
Lcho_2599
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A1946 transcriptional regulator CysB-like protein.
 
     0.799
Lcho_2594
PFAM: DNA polymerase III chi subunit HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC.
 
     0.688
Lcho_2600
PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A1947 putative pyridoxal phosphate aminotransferase protein.
       0.642
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.611
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.560
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.