STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2610PFAM: Disulphide bond formation protein DsbB; KEGG: bbr:BB2601 disulfide bond formation protein B. (165 aa)    
Predicted Functional Partners:
Lcho_4228
PFAM: DSBA oxidoreductase; KEGG: mpt:Mpe_A0151 thiol:disulfide interchange protein.
 
 
 0.913
Lcho_0267
Putative thiol:disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
 
 0.605
Lcho_2609
PFAM: Endoribonuclease L-PSP; KEGG: mpt:Mpe_A2555 hypothetical protein.
       0.599
Lcho_4291
KEGG: dar:Daro_0419 hypothetical protein.
  
     0.581
Lcho_2159
KEGG: rfr:Rfer_0414 DsbA oxidoreductase.
  
 
 0.519
Lcho_2608
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: mpt:Mpe_A2554 putative transporter DNA uptake transmembrane protein.
       0.518
Lcho_3811
KEGG: mpt:Mpe_A0118 hypothetical protein.
 
   
 0.488
dsbD
Protein-disulfide reductase; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.
  
  
 0.474
Lcho_2616
KEGG: pfo:Pfl_1984 fimbrial assembly.
 
     0.456
Lcho_1007
KEGG: cph:Cpha266_1838 hypothetical protein.
  
     0.450
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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