STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2611PFAM: Lytic transglycosylase catalytic; KEGG: reh:H16_A0991 putative transglycosylase. (251 aa)    
Predicted Functional Partners:
Lcho_1973
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: mpt:Mpe_A2530 membrane-bound lytic murein transglycosylase D, putative.
 
  
 0.651
Lcho_2612
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rso:RSc2310 putative GspG-related transmembrane protein.
       0.626
Lcho_2616
KEGG: pfo:Pfl_1984 fimbrial assembly.
       0.529
Lcho_2617
KEGG: rso:RSc2305 probable transmembrane protein.
       0.529
Lcho_2613
PFAM: type II secretion system protein; KEGG: rme:Rmet_4712 type II secretion system protein.
       0.497
Lcho_2614
PFAM: type II secretion system protein E; KEGG: rme:Rmet_4711 type II secretion system protein E.
       0.489
Lcho_2615
Hypothetical protein.
       0.489
Lcho_1011
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.486
Lcho_1019
KEGG: mpt:Mpe_A0568 flagellar biosynthesis ATPase; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase.
  
  
 0.481
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: mpt:Mpe_A0564 flagellar hook-basal body protein.
  
  
 0.478
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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