STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2663PFAM: transport system permease protein; KEGG: mpt:Mpe_A2306 iron(III) dicitrate-binding protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (335 aa)    
Predicted Functional Partners:
Lcho_2662
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A2305 ferric-citrate ABC transporter ATPase.
 
 
 0.999
Lcho_2664
PFAM: periplasmic binding protein; KEGG: mpt:Mpe_A2307 iron(III) dicitrate-binding protein.
 
 
 0.996
Lcho_2656
PFAM: periplasmic binding protein; KEGG: pol:Bpro_2784 periplasmic binding protein.
 
 
 0.983
Lcho_2665
Cobalbumin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.
 
   
 0.839
Lcho_2666
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mpt:Mpe_A2309 TonB-dependent outer membrane cobalamin receptor.
 
  
 0.833
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.812
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
  
  
 0.682
cobT
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
     
 0.672
Lcho_2658
PFAM: Phosphoglycerate mutase; KEGG: mpt:Mpe_A2301 fructose-2,6-biphosphatase.
     
 0.666
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
       0.589
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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