STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2709KEGG: mpt:Mpe_A2173 putative lyase; Belongs to the HpcH/HpaI aldolase family. (350 aa)    
Predicted Functional Partners:
Lcho_2417
PFAM: HpcH/HpaI aldolase; KEGG: pna:Pnap_3810 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
  0.923
Lcho_0078
TIGRFAM: malonate decarboxylase acyl carrier protein; PFAM: malonate decarboxylase delta subunit; KEGG: dac:Daci_1767 malonate decarboxylase acyl carrier protein.
  
  
 0.849
Lcho_3202
L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 hypothetical protein.
   
    0.807
Lcho_2710
KEGG: mpt:Mpe_A1366 putative signal peptide protein.
 
     0.754
Lcho_2707
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: mpt:Mpe_A2171 putative transcription regulator protein.
 
   
 0.664
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.644
icmF
methylmalonyl-CoA mutase, large subunit; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
 
  
 0.615
Lcho_2853
KEGG: mpt:Mpe_A3449 hypothetical protein.
  
     0.606
Lcho_1059
KEGG: mpt:Mpe_A1145 hypothetical protein.
  
     0.597
Lcho_3914
KEGG: mpt:Mpe_A0205 hypothetical protein.
  
     0.594
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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