STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2791PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dac:Daci_4658 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (368 aa)    
Predicted Functional Partners:
Lcho_1553
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ade:Adeh_2667 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
  
 
0.913
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.912
Lcho_0754
KEGG: mpt:Mpe_A1118 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
0.901
Lcho_0258
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.846
Lcho_2805
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mpt:Mpe_A1283 thioredoxin 1; Belongs to the thioredoxin family.
  
 
 0.718
Lcho_4107
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_2401 thioredoxin.
  
 
 0.718
Lcho_2790
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
     
 0.657
Lcho_0364
PFAM: Thioredoxin domain; KEGG: mpt:Mpe_A0294 putative thioredoxin protein.
  
 
 0.626
Lcho_4379
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 
 0.595
Lcho_2792
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase.
  
  
 0.571
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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