STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2832Hypothetical protein; KEGG: eba:ebA828 predicted membrane protein. (90 aa)    
Predicted Functional Partners:
Lcho_2831
PFAM: Na+/solute symporter; KEGG: mpt:Mpe_A0866 putative membrane transport protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.842
Lcho_0751
KEGG: mpt:Mpe_A1948 hypothetical protein.
  
     0.742
Lcho_0850
KEGG: mpt:Mpe_A1596 hypothetical protein.
  
     0.569
Lcho_1892
KEGG: mpt:Mpe_A3512 uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.567
Lcho_2833
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
       0.553
Lcho_0265
KEGG: mpt:Mpe_A0595 hypothetical protein.
  
     0.517
Lcho_3836
KEGG: mpt:Mpe_A3388 hypothetical protein.
  
     0.507
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.500
Lcho_0184
PFAM: protein of unknown function DUF1239; KEGG: mpt:Mpe_A3807 putative transmembrane protein.
  
     0.496
Lcho_4222
KEGG: aav:Aave_1579 hypothetical protein.
  
     0.487
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.