STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2870KEGG: mpt:Mpe_A1998 uncharacterized protein involved in fimbrial biogenesis; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein. (306 aa)    
Predicted Functional Partners:
Lcho_2869
KEGG: mpt:Mpe_A1997 hypothetical protein.
 
    0.856
Lcho_3404
PFAM: Pilus assembly protein PilP; KEGG: mpt:Mpe_A3110 fimbrial assembly protein.
  
   
 0.806
ispG
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.805
Lcho_3405
PFAM: Pilus assembly protein PilO; KEGG: mpt:Mpe_A3111 fimbrial assembly protein.
  
   
 0.804
Lcho_3406
PFAM: Fimbrial assembly family protein; KEGG: mpt:Mpe_A3112 fimbrial assembly protein.
  
  
 0.795
Lcho_3403
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: mpt:Mpe_A3109 fimbrial biogenesis protein.
  
   
 0.777
Lcho_3407
TIGRFAM: type IV pilus assembly protein PilM; KEGG: mpt:Mpe_A3113 fimbrial assembly protein.
  
   
 0.772
Lcho_1880
PFAM: type IV pilus assembly PilZ; KEGG: mpt:Mpe_A1858 type IV pilus assembly protein.
  
   
 0.768
Lcho_0349
PFAM: Peptidoglycan-binding LysM; KEGG: mpt:Mpe_A0282 putative signal peptide protein.
  
     0.762
Lcho_3967
CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aav:Aave_0905 CheA signal transduction histidine kinase.
 
   
 0.740
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.