STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2896KEGG: mpt:Mpe_A2108 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Lcho_2894
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mpt:Mpe_A2106 putative RNA polymerase sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.926
Lcho_2895
KEGG: ajs:Ajs_1767 putative transmembrane protein.
 
     0.888
Lcho_2897
PFAM: RDD domain containing protein; KEGG: mpt:Mpe_A2109 hypothetical protein.
     
 0.814
Lcho_2898
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
       0.673
cobD
Putative cobalamin biosynthesis transmembrane protein; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
  
     0.666
Lcho_2820
KEGG: mpt:Mpe_A1264 hypothetical protein.
  
     0.650
Lcho_3265
KEGG: pna:Pnap_0301 hypothetical protein.
  
     0.580
Lcho_0767
PFAM: HemY domain protein; KEGG: mpt:Mpe_A2999 putative porphyrin biosynthesis-related protein.
  
     0.550
Lcho_0265
KEGG: mpt:Mpe_A0595 hypothetical protein.
  
     0.544
Lcho_2853
KEGG: mpt:Mpe_A3449 hypothetical protein.
  
     0.499
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.