STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_2931KEGG: mpt:Mpe_A2942 fimbrial biogenesis protein. (236 aa)    
Predicted Functional Partners:
Lcho_2929
TIGRFAM: general secretion pathway protein H; KEGG: mpt:Mpe_A2940 fimbrial biogenesis protein.
 
  
 0.967
Lcho_2930
KEGG: asa:ASA_0688 type IV pilus assembly protein.
 
  
 0.913
Lcho_2933
KEGG: eba:ebA5107 hypothetical protein.
  
  
 0.903
Lcho_2932
KEGG: mpt:Mpe_A2943 fimbrial biogenesis protein.
       0.792
Lcho_2909
KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1.
  
  
 0.685
Lcho_2934
TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: mpt:Mpe_A2945 bifunctional protein diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase.
       0.655
Lcho_2906
KEGG: dar:Daro_3039 hypothetical protein.
 
  
 0.637
Lcho_3422
KEGG: mpt:Mpe_A3131 general secretion pathway protein J.
 
   
 0.593
Lcho_2905
Tfp pilus assembly protein FimT; KEGG: mfa:Mfla_2522 methylation.
 
  
 0.585
Lcho_2908
KEGG: mms:mma_3356 type IV pilus assembly protein PilX.
  
  
 0.556
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.