STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3010PFAM: cytochrome B561; KEGG: bvi:Bcep1808_6299 cytochrome b561. (236 aa)    
Predicted Functional Partners:
Lcho_3009
Hypothetical protein; KEGG: pna:Pnap_1533 diheme cytochrome c.
     0.906
Lcho_3008
PFAM: Domain of unknown function DUF1924; KEGG: pna:Pnap_1532 mono-heme class I cytochrome c.
 
  
 0.881
Lcho_3012
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rfr:Rfer_0504 periplasmic sensor signal transduction histidine kinase.
       0.757
Lcho_3011
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0503 two component transcriptional regulator, winged helix family.
       0.752
Lcho_3537
PFAM: cytochrome c prime; KEGG: pna:Pnap_0216 cytochrome c, class II.
 
    0.692
Lcho_3006
PFAM: FAD linked oxidase domain protein; KEGG: rso:RSc1556 probable oxidoreductase protein.
       0.514
Lcho_3007
PFAM: 2-nitropropane dioxygenase NPD; KEGG: mpt:Mpe_A3247 conserved hypothetical dioxygenase.
       0.514
Lcho_3013
PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: rpa:RPA0955 putative 5'-nucleotidase family protein; Belongs to the 5'-nucleotidase family.
       0.488
Lcho_1210
KEGG: pna:Pnap_3659 hypothetical protein.
 
     0.440
Lcho_3745
KEGG: rfr:Rfer_3758 hypothetical protein.
  
     0.407
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.