STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3033KEGG: hch:HCH_04226 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Lcho_3034
KEGG: mxa:MXAN_4492 hypothetical protein.
       0.628
Lcho_3035
KEGG: mxa:MXAN_4493 hypothetical protein.
       0.628
Lcho_3036
PFAM: tail sheath protein; KEGG: mxa:MXAN_4494 putative phage tail sheath protein.
       0.491
Lcho_3037
TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: mxa:MXAN_4495 hypothetical protein.
       0.440
Lcho_3032
Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_1881 helix-turn-helix, fis-type.
       0.434
Lcho_3038
KEGG: mxa:MXAN_4496 hypothetical protein.
       0.411
Lcho_3039
TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: mxa:MXAN_4497 hypothetical protein.
       0.411
Lcho_3040
KEGG: mxa:MXAN_4498 hypothetical protein.
       0.411
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.