STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3052KEGG: mxa:MXAN_4508 hypothetical protein. (1660 aa)    
Predicted Functional Partners:
Lcho_3054
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_4510 ATPase, AAA family.
 
     0.942
Lcho_3050
KEGG: mxa:MXAN_4506 hypothetical protein.
 
     0.903
Lcho_3047
TIGRFAM: phage tail protein; KEGG: mxa:MXAN_4505 putative phage tail protein.
 
     0.897
Lcho_3046
KEGG: mxa:MXAN_4504 hypothetical protein.
 
     0.892
Lcho_3044
KEGG: mxa:MXAN_4502 hypothetical protein.
 
     0.890
Lcho_3045
PFAM: GPW/gp25 family protein; KEGG: mxa:MXAN_4503 baseplate assembly protein W.
 
     0.887
Lcho_3042
KEGG: mxa:MXAN_4500 hypothetical protein.
 
     0.880
Lcho_3043
PFAM: Rhs element Vgr protein; KEGG: eli:ELI_09320 hypothetical protein.
 
     0.865
Lcho_3040
KEGG: mxa:MXAN_4498 hypothetical protein.
 
     0.834
Lcho_3038
KEGG: mxa:MXAN_4496 hypothetical protein.
 
     0.830
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.