STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3062PFAM: helix-turn-helix domain protein; KEGG: ajs:Ajs_3879 helix-turn-helix domain protein. (245 aa)    
Predicted Functional Partners:
Lcho_3059
KEGG: ajs:Ajs_3873 hypothetical protein.
 
     0.782
Lcho_3061
PFAM: YiaAB two helix domain protein; KEGG: pol:Bpro_0458 hypothetical protein.
 
     0.770
Lcho_3424
PFAM: General secretion pathway L; KEGG: mpt:Mpe_A3133 general secretion pathway protein L.
  
     0.497
Lcho_3060
KEGG: aav:Aave_4489 hypothetical protein.
       0.488
Lcho_3422
KEGG: mpt:Mpe_A3131 general secretion pathway protein J.
  
   
 0.479
Lcho_0737
PFAM: protein of unknown function DUF1289; KEGG: mpt:Mpe_A2641 hypothetical protein.
  
     0.467
Lcho_0453
PFAM: N-acylglucosamine 2-epimerase; KEGG: bpd:BURPS668_0335 N-acylglucosamine 2-epimerase family protein.
  
     0.450
Lcho_3058
PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A3732 putative transmembrane protein.
       0.432
Lcho_4294
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: pst:PSPTO_0022 DNA-binding protein.
     
 0.416
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.