STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3085PFAM: glycosyl transferase group 1; KEGG: acr:Acry_0205 glycosyl transferase, group 1. (409 aa)    
Predicted Functional Partners:
Lcho_3086
PFAM: protein of unknown function DUF218; KEGG: scl:sce0863 hypothetical protein.
       0.775
Lcho_3084
PFAM: glycosyl transferase group 1; KEGG: scl:sce8918 glycosyltransferase.
 
    
0.612
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.593
Lcho_2319
Undecaprenyl-phosphate glucose phosphotransferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.581
Lcho_2715
TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: mpt:Mpe_A1065 polysaccharide biosynthesis protein, putative.
 
  
 0.575
Lcho_3087
Hypothetical protein.
       0.539
Lcho_1381
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0844 glycosyltransferase involved in cell wall biogenesis-like.
 
 
 0.461
Lcho_0622
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.456
Lcho_1395
PFAM: sugar transferase; KEGG: sfu:Sfum_0975 undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.451
Lcho_2323
Nucleotide sugar dehydrogenase; KEGG: mpt:Mpe_A0606 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
  
  
 0.445
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.