STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3094KEGG: pca:Pcar_0383 MshA biogenesis protein, MshJ-like. (221 aa)    
Predicted Functional Partners:
Lcho_3096
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dar:Daro_0893 type II and III secretion system protein:secretin, N-terminal:secretin/TonB, short N-terminal.
 
  
 0.958
Lcho_3093
PFAM: Fimbrial assembly family protein; KEGG: dar:Daro_0890 hypothetical protein.
 
   
 0.954
Lcho_3092
KEGG: dar:Daro_0889 hypothetical protein.
 
   
 0.948
Lcho_3100
Conserved hypothetical protein; KEGG: rfr:Rfer_3363 methylation.
 
  
 0.902
Lcho_3104
Conserved hypothetical protein; KEGG: rfr:Rfer_3339 methylation.
 
  
 0.887
Lcho_3103
KEGG: rfr:Rfer_3340 hypothetical protein.
 
  
 0.877
Lcho_3101
Hypothetical protein; KEGG: spc:Sputcn32_0573 MSHA biogenesis protein MshQ.
 
     0.874
Lcho_3102
Conserved hypothetical protein with N-terminal methylation site; KEGG: dar:Daro_0884 prokaryotic N-terminal methylation site.
 
  
 0.856
Lcho_3097
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0879 type II secretion system protein E:general secretory system II, protein E, N-terminal.
 
  
 0.829
Lcho_3424
PFAM: General secretion pathway L; KEGG: mpt:Mpe_A3133 general secretion pathway protein L.
  
 
 0.798
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.