STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3095Hypothetical protein. (186 aa)    
Predicted Functional Partners:
Lcho_3093
PFAM: Fimbrial assembly family protein; KEGG: dar:Daro_0890 hypothetical protein.
       0.773
Lcho_3094
KEGG: pca:Pcar_0383 MshA biogenesis protein, MshJ-like.
       0.773
Lcho_3096
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dar:Daro_0893 type II and III secretion system protein:secretin, N-terminal:secretin/TonB, short N-terminal.
       0.773
Lcho_3097
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0879 type II secretion system protein E:general secretory system II, protein E, N-terminal.
       0.762
Lcho_3092
KEGG: dar:Daro_0889 hypothetical protein.
       0.741
Lcho_3098
PFAM: type II secretion system protein; KEGG: dar:Daro_0880 type II secretion system protein.
       0.531
Lcho_3099
Hypothetical protein.
       0.505
Lcho_3100
Conserved hypothetical protein; KEGG: rfr:Rfer_3363 methylation.
       0.475
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: ajs:Ajs_3312 argininosuccinate lyase.
       0.445
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.