STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3118TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: mpt:Mpe_A1582 ACR3 permease. (342 aa)    
Predicted Functional Partners:
Lcho_3119
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bmu:Bmul_6164 protein tyrosine phosphatase.
 
  
 0.886
Lcho_3121
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: mpt:Mpe_A1584 TC repressor.
 
  
 0.744
Lcho_3120
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.647
Lcho_1049
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mpt:Mpe_A2264 low molecular weight tyrosine-phosphatase.
  
  
 0.539
Lcho_1553
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ade:Adeh_2667 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.538
Lcho_1835
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mpt:Mpe_A1640 P1 ATPase/HMA domain.
  
  
 0.442
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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