STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3144KEGG: mpt:Mpe_A2615 DNA/pantothenate metabolism flavolike protein. (146 aa)    
Predicted Functional Partners:
Lcho_3149
TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: mpt:Mpe_A2610 ribosomal protein S6 modification protein, putative; Belongs to the RimK family.
 
  
  0.975
Lcho_3141
KEGG: mpt:Mpe_A2618 hypothetical protein.
 
     0.953
Lcho_3142
KEGG: mpt:Mpe_A2617 hypothetical protein.
 
     0.953
Lcho_3143
PFAM: dihydropteroate synthase DHPS; KEGG: mpt:Mpe_A2616 pterin-binding domain protein.
 
     0.953
Lcho_3153
TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; KEGG: mpt:Mpe_A2606 kinase, GHMP family, putative.
 
    0.809
Lcho_3140
PFAM: aspartate/glutamate/uridylate kinase; KEGG: mpt:Mpe_A2619 uncharacterized kinase.
 
     0.803
Lcho_3136
KEGG: mpt:Mpe_A2623 formylmethanofuran dehydrogenase.
 
     0.797
Lcho_3135
TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: Amidohydrolase 3; KEGG: mpt:Mpe_A2624 formylmethanofurane dehydrogenase, A subunit, putative.
 
     0.796
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.787
Lcho_3133
KEGG: mpt:Mpe_A2626 formylmethanofuran dehydrogenase; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase alpha subunit domain protein.
 
     0.786
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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