STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3158PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; WD40 domain protein beta Propeller; KEGG: slo:Shew_0490 peptidase S9, prolyl oligopeptidase active site domain protein. (668 aa)    
Predicted Functional Partners:
Lcho_3157
PFAM: GCN5-related N-acetyltransferase; KEGG: mpt:Mpe_A1092 putative amino-acid acetyltransferase.
       0.784
Lcho_3156
KEGG: mpt:Mpe_A1093 hypothetical protein.
       0.758
Lcho_3155
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mpt:Mpe_A1094 ATPase, AAA family protein.
       0.747
Lcho_1939
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_37730 putative TonB dependent receptor.
 
    0.525
Lcho_3154
PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_2445 phosphinothricin N-acetyltransferase.
       0.502
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.