STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3172Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: vei:Veis_0468 helix-turn-helix domain protein. (94 aa)    
Predicted Functional Partners:
Lcho_3171
KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system.
 
 
 0.989
Lcho_3170
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein.
 
     0.700
Lcho_4258
KEGG: bch:Bcen2424_3352 PilT protein domain protein.
  
     0.574
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.567
Lcho_2141
KEGG: pen:PSEEN0367 hypothetical protein.
 
   
 0.533
Lcho_4252
PFAM: protein of unknown function DUF883 ElaB; KEGG: rfr:Rfer_2238 protein of unknown function DUF883, ElaB.
   
  
 0.504
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.502
Lcho_4259
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bch:Bcen2424_3351 transcriptional regulator, AbrB family.
 
   
 0.486
Lcho_2768
PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_0378 ferritin, Dps family protein; Belongs to the Dps family.
   
    0.461
Lcho_4181
PFAM: protein of unknown function DUF1508; KEGG: ecx:EcHS_A2222 hypothetical protein.
   
    0.461
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.