STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3189KEGG: mxa:MXAN_4941 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Lcho_3191
Cholesterol oxidase; PFAM: glucose-methanol-choline oxidoreductase; KEGG: reh:H16_A1655 choline dehydrogenase.
     0.935
Lcho_3188
KEGG: mxa:MXAN_4939 hypothetical protein.
 
   
 0.934
Lcho_3190
KEGG: reh:H16_A1654 hypothetical membrane spanning protein.
 
     0.876
Lcho_1868
KEGG: art:Arth_1252 hypothetical protein.
 
   
 0.780
Lcho_3192
KEGG: rfr:Rfer_1230 hypothetical protein.
       0.671
Lcho_3044
KEGG: mxa:MXAN_4502 hypothetical protein.
  
     0.539
Lcho_3187
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: eba:ebD78 hypothetical protein.
       0.523
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.