STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3200KEGG: aav:Aave_2254 sugar ABC transporter, periplasmic sugar-binding protein. (354 aa)    
Predicted Functional Partners:
Lcho_3198
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: aav:Aave_2252 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
Lcho_3199
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_2253 ABC transporter-related protein.
 
 0.991
Lcho_0843
PFAM: inner-membrane translocator; KEGG: pde:Pden_1034 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.619
Lcho_3197
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: eca:ECA2270 DNA-binding transcriptional regulator AraC.
       0.493
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
     0.423
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.