STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araBL-ribulokinase; KEGG: eca:ECA2274 ribulokinase; TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY. (564 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.999
Lcho_3202
L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 hypothetical protein.
 
 
 0.997
Lcho_3181
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:bll6662 ribitol 2-dehydrogenase.
    
 0.910
Lcho_3756
PFAM: ribulose-phosphate 3-epimerase; KEGG: ajs:Ajs_0361 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.906
Lcho_3899
PFAM: ribulose-phosphate 3-epimerase; KEGG: ajs:Ajs_0361 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.906
Lcho_2477
PFAM: PfkB domain protein; KEGG: pde:Pden_5059 PfkB domain protein.
    
 0.814
Lcho_0410
KEGG: vei:Veis_2042 sugar-phosphate isomerases, RpiB/LacA/LacB family; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase.
    
  0.812
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
Lcho_3331
PFAM: Aldose 1-epimerase; KEGG: eca:ECA1388 aldose 1-epimerase.
 
   
 0.620
Lcho_2214
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vei:Veis_2115 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   
 0.563
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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