STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (497 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; KEGG: eca:ECA2274 ribulokinase; TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY.
 
 
 0.999
Lcho_3202
L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 hypothetical protein.
 
 
 0.994
Lcho_1115
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: vei:Veis_1238 NAD-dependent epimerase/dehydratase.
     
  0.800
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
 
   
 0.524
Lcho_3331
PFAM: Aldose 1-epimerase; KEGG: eca:ECA1388 aldose 1-epimerase.
 
  
 0.476
Lcho_3197
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: eca:ECA2270 DNA-binding transcriptional regulator AraC.
  
   
 0.474
Lcho_3200
KEGG: aav:Aave_2254 sugar ABC transporter, periplasmic sugar-binding protein.
 
     0.423
Lcho_3246
PFAM: glycoside hydrolase clan GH-D; KEGG: bpl:BURPS1106A_A2815 alpha-galactosidase.
  
   
 0.422
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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