Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (497 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; KEGG: eca:ECA2274 ribulokinase; TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY.
 
 
 0.999
Lcho_3202
L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 hypothetical protein.
 
  
 0.975
Lcho_3331
PFAM: Aldose 1-epimerase; KEGG: eca:ECA1388 aldose 1-epimerase.
 
 
 0.943
Lcho_3246
PFAM: glycoside hydrolase clan GH-D; KEGG: bpl:BURPS1106A_A2815 alpha-galactosidase.
  
  
 0.939
Lcho_3239
PFAM: glycoside hydrolase family 4; KEGG: rca:Rcas_1884 glycoside hydrolase family 4.
  
 
 0.917
Lcho_3245
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bam:Bamb_4931 beta-galactosidase.
  
 
  0.917
Lcho_0714
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain protein.
     
  0.800
Lcho_1111
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: aav:Aave_2596 gluconolactonase.
     
  0.800
Lcho_1115
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: vei:Veis_1238 NAD-dependent epimerase/dehydratase.
     
  0.800
Lcho_2323
Nucleotide sugar dehydrogenase; KEGG: mpt:Mpe_A0606 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
     
  0.800
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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