STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3205PFAM: protein of unknown function DUF1037; KEGG: smd:Smed_3808 protein of unknown function DUF1037. (267 aa)    
Predicted Functional Partners:
Lcho_3206
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH2165 hypothetical protein.
 
    0.895
Lcho_4326
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: smd:Smed_2952 oxidoreductase domain protein.
 
    0.775
Lcho_4327
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: atc:AGR_L_982 hypothetical protein.
 
    0.764
Lcho_3239
PFAM: glycoside hydrolase family 4; KEGG: rca:Rcas_1884 glycoside hydrolase family 4.
  
     0.751
Lcho_3204
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: gur:Gura_0276 helix-turn-helix-domain containing protein, AraC type.
 
     0.607
Lcho_3207
PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0434 major facilitator superfamily MFS_1.
       0.586
Lcho_0859
KEGG: pdi:BDI_2988 periplasmic component of the Tol biopolymer transport system.
  
     0.448
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.