STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3229PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1136 TonB-dependent receptor. (875 aa)    
Predicted Functional Partners:
Lcho_3228
Tryptophan halogenase; PFAM: FAD dependent oxidoreductase; tryptophan halogenase; KEGG: nar:Saro_1882 tryptophan halogenase.
 
     0.867
Lcho_3237
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_0226 periplasmic binding protein/LacI transcriptional regulator.
 
   
 0.734
Lcho_0392
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: pna:Pnap_0226 periplasmic binding protein/LacI transcriptional regulator.
 
   
 0.675
Lcho_3235
TIGRFAM: TonB family protein; KEGG: azo:azo2329 periplasmic biopolymer transport protein linking inner and outer membranes.
   
 
 0.578
Lcho_0815
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mag:amb3549 periplasmic protein TonB, links inner and outer membranes.
 
 
 
 0.539
Lcho_3402
KEGG: dac:Daci_5576 hypothetical protein.
  
 
   0.539
Lcho_1571
TIGRFAM: TonB family protein; KEGG: mpt:Mpe_A3718 periplasmic protein/biopolymer transport.
 
 
 
 0.502
Lcho_3231
KEGG: bxe:Bxe_A2996 hypothetical protein.
 
     0.497
Lcho_1935
KEGG: mpt:Mpe_A1758 hypothetical protein.
 
 
 
 0.467
Lcho_3101
Hypothetical protein; KEGG: spc:Sputcn32_0573 MSHA biogenesis protein MshQ.
  
 
   0.467
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.