STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3232PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bur:Bcep18194_A5005 biopolymer transport protein ExbD/TolR. (146 aa)    
Predicted Functional Partners:
Lcho_3234
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein.
 
 
 0.975
Lcho_3231
KEGG: bxe:Bxe_A2996 hypothetical protein.
 
 
   0.933
Lcho_3235
TIGRFAM: TonB family protein; KEGG: azo:azo2329 periplasmic biopolymer transport protein linking inner and outer membranes.
 
 
 0.920
Lcho_1938
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein.
 
 
 0.900
Lcho_0814
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein.
 
 
 0.899
Lcho_0477
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A0220 putative transport-related membrane protein.
 
 
 0.889
Lcho_1572
PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A3719 MotA/TolQ/ExbB proton channel family protein.
 
 
 0.884
tolQ
Protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.842
Lcho_1935
KEGG: mpt:Mpe_A1758 hypothetical protein.
 
 
 0.817
Lcho_0815
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mag:amb3549 periplasmic protein TonB, links inner and outer membranes.
 
 
 0.811
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.