STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3239PFAM: glycoside hydrolase family 4; KEGG: rca:Rcas_1884 glycoside hydrolase family 4. (474 aa)    
Predicted Functional Partners:
Lcho_3245
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bam:Bamb_4931 beta-galactosidase.
 
  
 0.958
Lcho_3246
PFAM: glycoside hydrolase clan GH-D; KEGG: bpl:BURPS1106A_A2815 alpha-galactosidase.
 
  
 0.940
Lcho_3297
Beta-fructofuranosidase; KEGG: cau:Caur_2727 glycosyl hydrolase family 32 domain protein; PFAM: Glycosyl hydrolase family 32 domain protein; SMART: glycoside hydrolase family 32; Belongs to the glycosyl hydrolase 32 family.
  
  
 0.935
Lcho_3323
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: btl:BALH_3635 oligo-1,6-glucosidase.
     
 0.909
Lcho_3325
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mlo:mll5109 alpha-glucosidase.
     
 0.909
Lcho_3326
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: csa:Csal_0261 alpha amylase.
     
 0.909
Lcho_3217
Alpha-glucosidase; PFAM: glycoside hydrolase family 31; KEGG: rso:RSc1081 probable glucosidase protein; Belongs to the glycosyl hydrolase 31 family.
     
 0.901
Lcho_3331
PFAM: Aldose 1-epimerase; KEGG: eca:ECA1388 aldose 1-epimerase.
     
  0.900
Lcho_3240
PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_3361 putative extracellular sugar-binding protein.
 
     0.786
Lcho_3205
PFAM: protein of unknown function DUF1037; KEGG: smd:Smed_3808 protein of unknown function DUF1037.
  
     0.751
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.