STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3253TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pna:Pnap_2837 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (397 aa)    
Predicted Functional Partners:
Lcho_3252
PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1672 protein of unknown function DUF214.
 
 
 0.972
Lcho_3251
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1671 ABC transporter related.
 
 
 0.966
Lcho_3254
PFAM: regulatory protein TetR; KEGG: rfr:Rfer_3622 transcriptional regulator, TetR family.
 
   
 0.943
Lcho_3709
PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3916 protein of unknown function DUF214.
 
 
 0.717
Lcho_4267
PFAM: protein of unknown function DUF214; KEGG: mpt:Mpe_A2068 hypothetical protein.
 
 
 0.698
Lcho_1968
PFAM: acriflavin resistance protein; KEGG: pna:Pnap_1682 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.658
Lcho_3744
PFAM: acriflavin resistance protein; KEGG: rfr:Rfer_3760 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.621
Lcho_3713
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pna:Pnap_2886 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family.
 
 
 0.604
Lcho_2546
PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A1290 putative transmembrane drug efflux protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.582
Lcho_3708
ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_2824 ABC transporter related.
 
 
 0.575
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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