STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3261PFAM: domain of unknown function DUF1745; KEGG: mpt:Mpe_A3636 hypothetical protein. (419 aa)    
Predicted Functional Partners:
Lcho_3262
KEGG: mpt:Mpe_A3635 hypothetical protein.
 
     0.817
Lcho_1827
KEGG: rfr:Rfer_1303 hypothetical protein.
  
     0.661
Lcho_1304
KEGG: mpt:Mpe_A3545 hypothetical protein.
  
     0.590
Lcho_3260
PFAM: FAD linked oxidase domain protein; KEGG: ajs:Ajs_0425 FAD linked oxidase domain protein.
       0.581
Lcho_3259
PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3639 FAD linked oxidase.
       0.539
Lcho_2710
KEGG: mpt:Mpe_A1366 putative signal peptide protein.
  
     0.516
Lcho_1980
KEGG: pol:Bpro_3522 hypothetical protein.
  
     0.511
Lcho_4009
KEGG: vei:Veis_1320 hypothetical protein.
  
     0.510
Lcho_3496
KEGG: mpt:Mpe_A3231 hypothetical protein.
  
     0.502
Lcho_0373
PFAM: Mg2 transporter protein CorA family protein; KEGG: mpt:Mpe_A0305 transport protein.
  
     0.470
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.