STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3271PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: bps:BPSS0415 lipoprotein. (981 aa)    
Predicted Functional Partners:
Lcho_3272
KEGG: bpd:BURPS668_A0656 putative lipoprotein.
       0.690
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.547
Lcho_3273
KEGG: sfv:SFV_0996 hypothetical protein.
       0.496
Lcho_3645
PFAM: cytochrome P450; KEGG: pna:Pnap_4029 cytochrome P450.
   
 0.493
Lcho_4101
KEGG: dra:DR_A0144 hypothetical protein.
   
 0.493
Lcho_2352
Exosortase 2; TIGRFAM: eight transmembrane protein EpsH; exosortase 2; PFAM: Eight transmembrane protein EpsH; KEGG: nmu:Nmul_A0246 hypothetical protein.
    
 
 0.429
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.