STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lcho_3293TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1665 ATPase, E1-E2 type. (889 aa)    
Predicted Functional Partners:
Lcho_3661
TIGRFAM: benzoyl-CoA oxygenase/reductase, BoxA protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pna:Pnap_2942 oxidoreductase FAD/NAD(P)-binding domain protein.
    
 0.712
Lcho_3296
PFAM: pseudouridine synthase; KEGG: ajs:Ajs_2505 pseudouridine synthase.
  
    0.566
Lcho_3294
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: scl:sce3322 put. D-ribose-binding periplasmic protein.
       0.549
Lcho_3292
PFAM: Integral membrane protein TerC; KEGG: ilo:IL1429 hypothetical protein.
       0.541
Lcho_3295
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
       0.539
Lcho_0013
PFAM: protein of unknown function UPF0118; KEGG: rfr:Rfer_2147 protein of unknown function UPF0118.
    0.506
Lcho_2486
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: tbd:Tbd_0095 metallo-beta-lactamase superfamily protein.
 
 
 0.501
Lcho_2533
PFAM: protein of unknown function DUF692; KEGG: mpt:Mpe_A2959 hypothetical protein.
   
    0.482
Lcho_2147
PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_1133 sodium/calcium exchanger membrane protein.
 
 
 0.478
Lcho_0871
PFAM: type IV secretory pathway VirB3 family protein; KEGG: bch:Bcen2424_3314 type IV secretory pathway, VirB3 family protein.
   
    0.472
Your Current Organism:
Leptothrix cholodnii
NCBI taxonomy Id: 395495
Other names: L. cholodnii SP-6, Leptothrix cholodnii SP-6, Leptothrix cholodnii str. SP-6, Leptothrix cholodnii strain SP-6
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.